mykola/freebsd-ports
1
0
Fork 0
forked from Lainports/freebsd-ports
Code Pull requests Activity

math/suitesparse: Update 4.0.2 -> 5.2.0

Browse source 
Port changes:
* Change to DISTVERSION
* Update MASTER_SITES
* Change to LICENSE_COMB=dual
* Add LIB_DEPENDS
* Unbundle metis, made it a dependency
* Update do-build and do-install
* Update WWW

Bump 11 ports.
games/naev is marked broken because it depends on the no longer installed library.

PR:		210579
Submitted by:	yuri
Submitted by:	pfg
Approved by:	maintainer timeout (maho@FreeBSD.org, 21 months)
Approved by:	maintainer timeout (fortran@FreeBSD.org, 45 days)
This commit is contained in:
Yuri Victorovich 2018-04-26 06:41:30 +00:00
parent df214e1a6c
commit 61818ce94b
16 changed files with 81 additions and 89 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
games/naev/Makefile
View file

@ -13,6 +13,8 @@ COMMENT= 2D action/RPG space game
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN= Depends on the library that isn't installed by SuiteSparse any more: https://github.com/naev/naev/issues/774
LIB_DEPENDS= libpng.so:graphics/png \
libfreetype.so:print/freetype2 \
libvorbisfile.so:audio/libvorbis \

2
math/arpack++/Makefile
View file

@ -3,7 +3,7 @@
PORTNAME= arpack++
PORTVERSION= 1.2
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= math
MASTER_SITES= http://www.ime.unicamp.br/%7echico/arpack++/
DISTNAME= ${PORTNAME}

1
math/ceres-solver/Makefile
View file

@ -2,6 +2,7 @@
PORTNAME= ceres-solver
DISTVERSION= 1.14.0
PORTREVISION= 1
CATEGORIES= math
MAINTAINER= jbeich@FreeBSD.org

2
math/dynare/Makefile
View file

@ -2,7 +2,7 @@
PORTNAME= dynare
DISTVERSION= 4.5.4
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math
MASTER_SITES= http://www.dynare.org/release/source/

2
math/freemat/Makefile
View file

@ -4,7 +4,7 @@
PORTNAME= FreeMat
PORTVERSION= 4.2
DISTVERSIONSUFFIX= -Source
PORTREVISION= 17
PORTREVISION= 18
CATEGORIES= math science
MASTER_SITES= SF/freemat/FreeMat4

1
math/g2o/Makefile
View file

@ -3,6 +3,7 @@
PORTNAME= g2o
DISTVERSION= 20170730_git-87
DISTVERSIONSUFFIX= -gbbe3c2b
PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

1
math/octave/Makefile
View file

@ -3,6 +3,7 @@
PORTNAME= octave
PORTVERSION= ${OCTAVE_VERSION}
PORTREVISION= 1
CATEGORIES= math java
MASTER_SITES= GNU

1
math/py-cvxopt/Makefile
View file

@ -2,6 +2,7 @@
PORTNAME= cvxopt
DISTVERSION= 1.2.0
PORTREVISION= 1
CATEGORIES= math python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
math/py-numpy/Makefile
View file

@ -4,7 +4,7 @@
PORTNAME= numpy
PORTVERSION= 1.13.3
DISTVERSIONPREFIX= v
PORTREVISION= 2
PORTREVISION= 3
PORTEPOCH= 1
CATEGORIES= math python
MASTER_SITES= http://docs.scipy.org/doc/${PORTNAME}-${PORTVERSION:R}.0/:doc

2
math/scilab/Makefile
View file

@ -3,7 +3,7 @@
PORTNAME= scilab
PORTVERSION= 5.5.2
PORTREVISION= 10
PORTREVISION= 11
CATEGORIES= math cad java
MASTER_SITES= http://www.scilab.org/download/${PORTVERSION}/
DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX}

81
math/suitesparse/Makefile
View file

@ -2,19 +2,27 @@
# $FreeBSD$
PORTNAME= suitesparse
PORTVERSION= 4.0.2
PORTREVISION= 8
DISTVERSION= 5.2.0
CATEGORIES= math
MASTER_SITES= http://www.cise.ufl.edu/research/sparse/SuiteSparse/
MASTER_SITES= http://faculty.cse.tamu.edu/davis/SuiteSparse/
DISTNAME= SuiteSparse-${PORTVERSION}
MAINTAINER= fortran@FreeBSD.org
COMMENT= SuiteSparse is a set of packages for sparse matrices calculation
LICENSE= GPLv2 LGPL21
LICENSE_COMB= multi
LICENSE_COMB= dual
USES= fortran gmake
LIB_DEPENDS= libmetis.so:math/metis \
liblapack.so:math/lapack
USES= compiler:openmp fortran gmake
USE_LDCONFIG= yes
PLIST_SUB= SHL3=${DISTVERSION} SHL1=${DISTVERSION:R:R}
WRKSRC= ${WRKDIR}/SuiteSparse
WRKSRC_SHARED= ${WRKSRC}_shared
OPTIONS_RADIO= BLAS
OPTIONS_RADIO_BLAS= OPENBLAS NETLIB ATLAS
@ -24,16 +32,6 @@ OPENBLAS_USES= blaslapack:openblas
NETLIB_USES= blaslapack:netlib
ATLAS_USES= blaslapack:atlas
.if defined (WITH_METIS)
LIB_DEPENDS= libmetis.so:math/metis4
RESTRICTED= GPL and METIS licenses are contradictory
.endif
CONFLICTS= umfpack-*
LDFLAGS+= -L${LOCALBASE}/lib
.include <bsd.port.options.mk>
.if ${ARCH} == "sparc64"
@ -42,22 +40,18 @@ PICFLAG?= -fPIC
PICFLAG?= -fpic
.endif
USE_LDCONFIG= yes
WRKSRC=${WRKDIR}/SuiteSparse
WRKSRC_SHARED=${WRKSRC}_shared
SVERSION=1
.if defined (WITH_METIS)
METIS=${LOCALBASE}/lib/libmetis.a
METIS_PATH=${LOCALBASE}/include/metis
METIS= ${LOCALBASE}/lib/libmetis.a
METIS_PATH= ${LOCALBASE}/include/metis
CHOLMOD_CONFIG=
.else
CHOLMOD_CONFIG= -DNPARTITION
.endif
CFLAGS+= -I${LOCALBASE}/include
CXXFLAGS+= -I${LOCALBASE}/include
MAKE_ARGS+= MY_METIS_LIB="-L${LOCALBASE}/lib -lmetis $(LDFLAGS)"
post-patch:
@${RM} -r ${WRKSRC}/metis-5.1.0
@${FIND} -X ${WRKSRC} -type f -name 'Makefile' -or -name '*.mk' | ${XARGS} \
${REINPLACE_CMD} -e '\|^AR =|s|ar|${AR}|' \
${REINPLACE_CMD} -i '' \
-e '\|^AR =|s|ar|${AR}|' \
-e '\|^BLAS =|s|=.*|= ${LDFLAGS} ${BLASLIB}|' \
-e '\|^CC =|d' \
-e '\|^CFLAGS =|{s|-O[1-9]\{0,1\}||g;s|=|= ${CFLAGS} $${PICFLAG} |;}' \
@ -78,30 +72,21 @@ post-patch:
${REINPLACE_CMD} -e 's|$$(CFLAGS)|$$(CFLAGS) $$(PICFLAG)|g'
do-build:
@cd ${WRKSRC} ; ${SETENV} ${MAKE_ENV} PICFLAG= \
${MAKE_CMD} ${_MAKE_JOBS} ${MAKE_ARGS}
@cd ${WRKSRC_SHARED} ; ${SETENV} ${MAKE_ENV} PICFLAG=${PICFLAG} \
${MAKE_CMD} ${_MAKE_JOBS} ${MAKE_ARGS}
post-build:
@for i in `find ${WRKSRC_SHARED} -type f -name '*.a'` ; do \
j=$${i##*/} ; ${LD} -Bshareable -o $${i%.a}.so.${SVERSION} -x \
-soname $${j%.a}.so.${SVERSION} --whole-archive $${i} ; \
done
@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} PICFLAG= \
LD_LIBRARY_PATH=${WRKDIR}/SuiteSparse/lib ${MAKE_CMD} ${_MAKE_JOBS} ${MAKE_ARGS}
@cd ${WRKSRC_SHARED} && ${SETENV} ${MAKE_ENV} PICFLAG=${PICFLAG} \
LD_LIBRARY_PATH=${WRKDIR}/SuiteSparse/lib ${MAKE_CMD} ${_MAKE_JOBS} ${MAKE_ARGS}
do-install:
@${MKDIR} ${STAGEDIR}${PREFIX}/include/suitesparse
@${LN} -sf ${PREFIX}/include/suitesparse ${STAGEDIR}${PREFIX}/include/ufsparse
.for d in AMD BTF CAMD CCOLAMD CHOLMOD COLAMD CXSparse KLU SPQR UMFPACK
@${INSTALL_DATA} ${WRKSRC}/${d}/Include/*.h ${STAGEDIR}${PREFIX}/include/suitesparse
@cd ${STAGEDIR}${PREFIX}/include && ${LN} -s suitesparse ufsparse
.for d in AMD BTF CAMD CCOLAMD CHOLMOD COLAMD CSparse CXSparse KLU SPQR UMFPACK # CSparse: shared lib bot built
${INSTALL_DATA} ${WRKSRC}/${d}/Include/*.h ${STAGEDIR}${PREFIX}/include/suitesparse
.endfor
@${INSTALL_DATA} ${WRKSRC}/SuiteSparse_config/SuiteSparse_config.h ${STAGEDIR}${PREFIX}/include/suitesparse
@${INSTALL_DATA} ${WRKSRC}/UMFPACK/Source/umf_config.h ${STAGEDIR}${PREFIX}/include/suitesparse
@${INSTALL_DATA} ${WRKSRC}/SPQR/Include/*.hpp ${STAGEDIR}${PREFIX}/include/suitesparse
@for i in `find ${WRKSRC_SHARED} -type f -name '*.a'` ; do \
${INSTALL_DATA} ${WRKSRC}/$${i##${WRKSRC_SHARED}/} \
$${i%.a}.so.${SVERSION} ${STAGEDIR}${PREFIX}/lib ; \
j=$${i##*/} ; ${LN} -sf $${j%.a}.so.${SVERSION} ${STAGEDIR}${PREFIX}/lib/$${j%.a}.so ; \
done
${INSTALL_DATA} ${WRKSRC}/SuiteSparse_config/SuiteSparse_config.h ${STAGEDIR}${PREFIX}/include/suitesparse
${INSTALL_DATA} ${WRKSRC}/UMFPACK/Source/umf_config.h ${STAGEDIR}${PREFIX}/include/suitesparse
${INSTALL_DATA} ${WRKSRC}/SPQR/Include/*.hpp ${STAGEDIR}${PREFIX}/include/suitesparse
${INSTALL_DATA} ${WRKSRC_SHARED}/lib/*.so* ${STAGEDIR}${PREFIX}/lib/
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so*
.include <bsd.port.mk>

5
math/suitesparse/distinfo
View file

@ -1,2 +1,3 @@
SHA256 (SuiteSparse-4.0.2.tar.gz) = 93b5928987fe010808b3fdff3e7edef42fb2d8cfd65b09dd6d4c41756acb0050
SIZE (SuiteSparse-4.0.2.tar.gz) = 22421100
TIMESTAMP = 1524200823
SHA256 (SuiteSparse-5.2.0.tar.gz) = 3c46c035ea8217649958a0f73360e825b0c9dcca4e32a9349d2c7678c0d48813
SIZE (SuiteSparse-5.2.0.tar.gz) = 46053054

2
math/suitesparse/pkg-descr
View file

@ -12,4 +12,4 @@ It contains:
* CSparse: a concise sparse matrix package
* CXSparse: and extended version of CSparse
WWW: http://www.cise.ufl.edu/research/sparse/SuiteSparse/
WWW: http://faculty.cse.tamu.edu/davis/suitesparse.html

63
math/suitesparse/pkg-plist
View file

@ -1,7 +1,7 @@
include/suitesparse/SuiteSparse_config.h
include/suitesparse/SuiteSparseQR.hpp
include/suitesparse/SuiteSparseQR_C.h
include/suitesparse/SuiteSparseQR_definitions.h
include/suitesparse/SuiteSparse_config.h
include/suitesparse/amd.h
include/suitesparse/amd_internal.h
include/suitesparse/btf.h
@ -11,11 +11,15 @@ include/suitesparse/camd_internal.h
include/suitesparse/ccolamd.h
include/suitesparse/cholmod.h
include/suitesparse/cholmod_blas.h
include/suitesparse/cholmod_camd.h
include/suitesparse/cholmod_check.h
include/suitesparse/cholmod_cholesky.h
include/suitesparse/cholmod_complexity.h
include/suitesparse/cholmod_config.h
include/suitesparse/cholmod_core.h
include/suitesparse/cholmod_function.h
include/suitesparse/cholmod_gpu.h
include/suitesparse/cholmod_gpu_kernels.h
include/suitesparse/cholmod_internal.h
include/suitesparse/cholmod_io64.h
include/suitesparse/cholmod_matrixops.h
@ -29,6 +33,8 @@ include/suitesparse/klu.h
include/suitesparse/klu_internal.h
include/suitesparse/klu_version.h
include/suitesparse/spqr.hpp
include/suitesparse/spqrgpu.hpp
include/suitesparse/umf_config.h
include/suitesparse/umfpack.h
include/suitesparse/umfpack_col_to_triplet.h
include/suitesparse/umfpack_defaults.h
@ -62,50 +68,43 @@ include/suitesparse/umfpack_timer.h
include/suitesparse/umfpack_transpose.h
include/suitesparse/umfpack_triplet_to_col.h
include/suitesparse/umfpack_wsolve.h
include/suitesparse/umf_config.h
include/ufsparse
lib/libamd.a
lib/libamd.so
lib/libamd.so.1
lib/libbtf.a
lib/libamd.so.2
lib/libamd.so.2.4.6
lib/libbtf.so
lib/libbtf.so.1
lib/libcamd.a
lib/libbtf.so.1.2.6
lib/libcamd.so
lib/libcamd.so.1
lib/libccolamd.a
lib/libcamd.so.2
lib/libcamd.so.2.4.6
lib/libccolamd.so
lib/libccolamd.so.1
lib/libcerbla.a
lib/libcerbla.so
lib/libcerbla.so.1
lib/libcholmod.a
lib/libccolamd.so.2
lib/libccolamd.so.2.9.6
lib/libcholmod.so
lib/libcholmod.so.1
lib/libcolamd.a
lib/libcholmod.so.3
lib/libcholmod.so.3.0.12
lib/libcolamd.so
lib/libcolamd.so.1
lib/libcsparse.a
lib/libcsparse.so
lib/libcsparse.so.1
lib/libcxsparse.a
lib/libcolamd.so.2
lib/libcolamd.so.2.9.6
lib/libcxsparse.so
lib/libcxsparse.so.1
lib/libklu.a
lib/libcxsparse.so.3
lib/libcxsparse.so.3.2.0
lib/libklu.so
lib/libklu.so.1
lib/libldl.a
lib/libklu.so.1.3.8
lib/libldl.so
lib/libldl.so.1
lib/librbio.a
lib/libldl.so.2
lib/libldl.so.2.2.6
lib/librbio.so
lib/librbio.so.1
lib/libspqr.a
lib/librbio.so.2
lib/librbio.so.2.2.6
lib/libspqr.so
lib/libspqr.so.1
lib/libsuitesparseconfig.a
lib/libspqr.so.2
lib/libspqr.so.2.0.8
lib/libsuitesparseconfig.so
lib/libsuitesparseconfig.so.1
lib/libumfpack.a
lib/libsuitesparseconfig.so.%%SHL1%%
lib/libsuitesparseconfig.so.%%SHL3%%
lib/libumfpack.so
lib/libumfpack.so.1
lib/libumfpack.so.5
lib/libumfpack.so.5.7.6

2
science/mbdyn/Makefile
View file

@ -3,7 +3,7 @@
PORTNAME= mbdyn
PORTVERSION= 1.7.2
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= https://www.mbdyn.org/userfiles/downloads/

1
science/py-scikit-sparse/Makefile
View file

@ -3,6 +3,7 @@
PORTNAME= scikit-sparse
DISTVERSION= 0.4.3
PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}