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New port: biology/treekin: Efficient computation of RNA folding dynamics

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This commit is contained in:
Yuri Victorovich 2019-06-15 20:37:06 +00:00
parent 9785fdd323
commit 656bb703a3
4 changed files with 37 additions and 0 deletions
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1
biology/Makefile
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@ -155,6 +155,7 @@
SUBDIR += tRNAscan-SE
SUBDIR += t_coffee
SUBDIR += tabixpp
SUBDIR += treekin
SUBDIR += treepuzzle
SUBDIR += trimadap
SUBDIR += trimmomatic

28
biology/treekin/Makefile Normal file
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@ -0,0 +1,28 @@
# $FreeBSD$
PORTNAME= treekin
DISTVERSION= 0.5.1
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/packages/source/
DISTNAME= Treekin-${DISTVERSION}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Efficient computation of RNA folding dynamics
LICENSE= LatticeLib
LICENSE_NAME= LatticeLib Disclaimer and Copyright
LICENSE_FILE= ${WRKSRC}/COPYING
LICENSE_PERMS= auto-accept dist-mirror pkg-mirror
BUILD_DEPENDS= lapacke>0:math/lapacke
USES= blaslapack:netlib fortran gmake localbase:ldflags
GNU_CONFIGURE= yes
BINARY_ALIAS= make=${GMAKE}
PLIST_FILES= bin/${PORTNAME} \
man/man1/${PORTNAME}.1.gz
.include <bsd.port.mk>

3
biology/treekin/distinfo Normal file
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TIMESTAMP = 1560629735
SHA256 (Treekin-0.5.1.tar.gz) = aae56c1a746829b02a9b97c6a54d1d58348718d4ca585ef41a5dbdd41d5c9f06
SIZE (Treekin-0.5.1.tar.gz) = 222232

5
biology/treekin/pkg-descr Normal file
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@ -0,0 +1,5 @@
treekin computes folding dynamics on coarse grained version of an energy
landscape, where all conformations belonging to the same local minimum have
been contracted into a single macro-state.
WWW: https://www.tbi.univie.ac.at/RNA/Treekin/