Simulations and estimations of discrete, univariate or multivariate
gaussian, mixture of univariate or multivariate gaussian hidden
Markov models.
WWW: http://r-forge.r-project.org/projects/rhmm/
Feature safe: yes
2012-11-26 games/stepbill: No more public distfiles
2012-11-26 deskutils/ktagebuch: No more public distfiles
2012-11-26 games/jetpack: No more public distfiles
2012-11-26 games/tremor: No more public distfiles
2012-11-26 graphics/jpeg2pdf: No more public distfiles
2012-11-26 java/westhawksnmp: No more public distfiles
2012-11-26 japanese/tcl76: No more public distfiles
2012-11-26 math/stepulator: No more public distfiles
2012-11-26 editors/jedit-devel: Stable version is more recent than devel
2012-11-26 www/trac-wikirename: Functionality of this plugin is included in the Trac core since 0.12
Feature safe: yes
2012-11-27 devel/jakarta-commons-chain: Depends on the expired devel/portlet-api
2012-11-27 math/p5-Math-LinearCombination: Depends on the expired p5-Class-Field
2012-11-26 x11/padkey: No more public distfiles
2012-11-26 japanese/gicq: No more public distfiles and development ceased
2012-11-26 www/momspider: No more public distfiles
2012-11-26 japanese/perl5: Recent perl supports correctly japanese, consider using them
2012-11-26 sysutils/fuser: No more public distfiles
2012-11-26 textproc/ascii2pdf: No more public distfiles
Feature safe: yes
LearnBayes contains a collection of functions helpful in learning
the basic tenets of Bayesian statistical inference. It contains
functions for summarizing basic one and two parameter posterior
distributions and predictive distributions. It contains MCMC
algorithms for summarizing posterior distributions defined by the
user. It also contains functions for regression models, hierarchical
models, Bayesian tests, and illustrations of Gibbs sampling.
WWW: http://cran.r-project.org/web/packages/LearnBayes/
Feature safe: yes
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions
and extensions for GNU Octave. contains the source for all the functions
plus build and install scripts.
This is cgi, which provides a common gatway interface for Octave.
Feature safe: yes
This package contains functions to perform Bayesian inference using
posterior simulation for a number of statistical models. Most
simulation is done in compiled C++ written in the Scythe Statistical
Library Version 1.0.3. All models return coda mcmc objects that can
then be summarized using the coda package. MCMCpack also contains
some useful utility functions, including some additional density
functions and pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm, and
tools for visualization.
WWW: http://cran.r-project.org/web/packages/MCMCpack/
Feature safe: yes
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenBLAS is an open source project supported by
Lab of Parallel Software and Computational Science, ISCAS.
NOTE: If you want to specify your CPU microarchitecture manually,
please use TARGET_CPU_ARCH knob, e.g., "make TARGET_CPU_ARCH=NEHALEM".
This value is set TARGET build flag.
WWW: https://github.com/xianyi/OpenBLAS
PR: 165684
Submitted by: Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp>
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is lssa.
A package implementing tools to compute spectral decompositions of
irregularly-spaced time series. Currently includes functions based off the
Lomb-Scargle periodogram and Adolf Mathias' implementation for R and C (see
http://www.jstatsoft.org/v11/i02).
WWW: http://octave.sourceforge.net/
graphics software based on the OpenGL Shading Language (GLSL) specification.
GLM provides classes and functions designed and implemented with the same
naming conventions and functionalities than GLSL so that when a programmer
knows GLSL, he knows GLM as well which makes it really easy to use.
modelling, fitting, analysis and forecasting of Generalized Dynamic Linear
Models (DLMs). It includes functions to name and extract individual components
of a DLM, build classical seasonal time-series models (monthly, quarterly,
yearly, etc. with calendar adjustments) and provides a unified interface
compatible with other state-space packages including: dlm, FKF and KFAS.
WWW: http://cran.r-project.org/web/packages/dlmodeler/
PR: 170069
Submitted by: Cyrille Szymanski <cnszym@gmail.com>
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is ncarray.
Access a single or a collection of NetCDF files as a multi-dimensional array.
CONFLICTS, LATEST_LINK, and PORTSCOUT; adjust dependent ports; explicitly
note the restrictive license of the metis ports (while here, append the MPI port to
*DEPENDS in math/parmetis, rather than using an assignment)
PR: 169578
Math::GMPz is a bignum module utilising the GNU MP (GMP) library. Basically this
module simply wraps all of the mpz integer functions provided by that library.
See the Math::GMPz test suite for some examples of usage.
WWW: http://search.cpan.org/dist/Math-GMPz/
Math::GMPq is a bigrational module utilising the GNU MP (GMP) library. Basically
this module simply wraps all of the mpq rational functions provided by that
library. See the Math::GMPq test suite for some examples of usage.
IMPORTANT:
If your perl was built with '-Duse64bitint' you need to assign all integers
larger than 52-bit in a 'use integer;' block. Failure to do so can result in the
creation of the variable as an NV (rather than an IV) - with a resultant loss of
precision.
WWW: http://search.cpan.org/dist/Math-GMPq/
Math::GMPf is a bigfloat module utilising the GNU MP (GMP) library. Basically
this module simply wraps all of the mpf floating point functions provided by
that library. See the Math::GMPf test suite for some examples of usage.
WWW: http://search.cpan.org/dist/Math-GMPf/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is java, and provides a Java interface with OO-like Java objects
manipulation.
Please note that port revision for all the Haskell ports without version changes
are also bumped. Other per-port updates are coming soon (in separate commits)!
In addition to that, separate -docs ports are no longer needed so they are
now removed.
Thanks ashish@ for the assistance.
Obtained from: FreeBSD Haskell
statistics components addressing the most common problems not available in the
Java programming language or Commons Lang.
WWW: http://jakarta.apache.org/commons/math/
PR: ports/166398
Submitted by: Muhammad Moinur Rahmanh <5u623l20@gmail.com>
2012-05-10 archivers/php4-zlib: php4 is EOLed
2012-05-10 converters/php4-iconv: php4 is EOLed
2012-05-10 converters/php4-mbstring: php4 is EOLed
2012-05-10 converters/php4-recode: php4 is EOLed
2012-05-10 databases/php4-dba: php4 is EOLed
2012-05-10 databases/php4-dbase: php4 is EOLed
2012-05-10 databases/php4-dbx: php4 is EOLed
2012-05-10 databases/php4-filepro: php4 is EOLed
2012-05-10 databases/php4-interbase: php4 is EOLed
2012-05-10 databases/php4-mssql: php4 is EOLed
2012-05-10 databases/php4-mysql: php4 is EOLed
2012-05-10 databases/php4-odbc: php4 is EOLed
2012-05-10 databases/php4-oracle: php4 is EOLed
2012-05-10 databases/php4-pgsql: php4 is EOLed
databases/php4-rrdtool: php4 is EOLed
2012-05-10 databases/php4-sybase_ct: php4 is EOLed
2012-05-10 devel/php4-dio: php4 is EOLed
2012-05-10 devel/php4-gettext: php4 is EOLed
2012-05-10 devel/php4-mcve: php4 is EOLed
2012-05-10 devel/php4-ncurses: php4 is EOLed
2012-05-10 devel/php4-pcntl: php4 is EOLed
2012-05-10 devel/php4-pcre: php4 is EOLed
2012-05-10 devel/php4-readline: php4 is EOLed
2012-05-10 devel/php4-shmop: php4 is EOLed
2012-05-10 devel/php4-sysvmsg: php4 is EOLed
2012-05-10 devel/php4-sysvsem: php4 is EOLed
2012-05-10 devel/php4-sysvshm: php4 is EOLed
2012-05-10 devel/php4-tokenizer: php4 is EOLed
2012-05-10 finance/php4-pfpro: php4 is EOLed
2012-05-10 ftp/php4-curl: php4 is EOLed
2012-05-10 ftp/php4-ftp: php4 is EOLed
2012-05-10 graphics/php4-chartdirector: php4 is EOLed
2012-05-10 graphics/php4-exif: php4 is EOLed
2012-05-10 graphics/php4-gd: php4 is EOLed
lang/php4: php4 is EOLed
2012-05-10 lang/php4-extensions: php4 is EOLed
2012-05-10 lang/php4-overload: php4 is EOLed
2012-05-10 mail/php4-imap: php4 is EOLed
2012-05-10 math/php4-bcmath: php4 is EOLed
2012-05-10 math/php4-gmp: php4 is EOLed
2012-05-10 misc/php4-calendar: php4 is EOLed
2012-05-10 misc/php4-mcal: php4 is EOLed
2012-05-10 net/php4-ldap: php4 is EOLed
2012-05-10 net/php4-sockets: php4 is EOLed
2012-05-10 net/php4-xmlrpc: php4 is EOLed
2012-05-10 net/php4-yp: php4 is EOLed
2012-05-10 net-mgmt/php4-snmp: php4 is EOLed
2012-05-10 security/php4-crack: php4 is EOLed
2012-05-10 security/php4-mcrypt: php4 is EOLed
2012-05-10 security/php4-mhash: php4 is EOLed
2012-05-10 security/php4-openssl: php4 is EOLed
2012-05-10 sysutils/php4-posix: php4 is EOLed
2012-05-10 textproc/php4-ctype: php4 is EOLed
2012-05-10 textproc/php4-domxml: php4 is EOLed
2012-05-10 textproc/php4-pspell: php4 is EOLed
2012-05-10 textproc/php4-wddx: php4 is EOLed
2012-05-10 textproc/php4-xml: php4 is EOLed
2012-05-10 textproc/php4-xslt: php4 is EOLed
2012-05-10 www/php4-session: php4 is EOLed
2012-05-10 archivers/pecl-zip: php4 is EOLed
2012-05-10 databases/pecl-sqlite: php4 is EOLed
2012-05-11 devel/pear-XML_XPath: php4 is EOLed
2012-05-11 devel/pecl-json: php4 is EOLed
2012-05-10 www/pecl-tidy: php4 is EOLed
2012-05-10 www/php-dyn: php4 is EOLed
2012-05-11 security/pecl-hash: php4 is EOLed
2012-05-11 net/phpldapadmin098: php4 is EOLed
graphics/jpgraph: php4 is EOLed
Implements a number of axis labeling schemes, including those
compared in An Extension of Wilkinson's Algorithm for Positioning
Tick Labels on Axes by Talbot, Lin, and Hanrahan, InfoVis 2010.
WWW: http://cran.r-project.org/web/packages/labeling/
Viper is a minimalistic scientific plotter and run-time visualization module.
Viper has support for visualizing meshes and solutions in DOLFIN.
WWW: https://launchpad.net/fenics-viper
PR: ports/166913
Submitted by: jwbacon@tds.net
The Unified Form Language (UFL) is a domain specific language for declaration
of finite element discretizations of variational forms.
WWW: https://launchpad.net/ufl
PR: ports/166911
Submitted by: jwbacon@tds.net
The FInite element Automatic Tabulator FIAT supports generation of arbitrary
order instances of the Lagrange elements on lines, triangles, and tetrahedra.
WWW: https://launchpad.net/fiat
PR: ports/166910
Submitted by: jwbacon@tds.net
the evaluation of a multilinear form given in mathematical notation.
WWW: https://launchpad.net/ffc
PR: 166700
Submitted by: Jason Bacon <jwbacon@tds.net>
gnuplot to produce fig output and then mangle it to fill in the bars. Any number
of clustered datasets are supported, as well as automatic averaging and other
features.
WWW: http://www.burningcutlery.com/derek/bargraph/
PR: ports/166410
Submitted by: Dereckson <dereckson@gmail.com>
Approved by: wen@ (co-mentor)
Feature safe: yes
- add and update URLs of MASTER_SITES
- update author's email address
- use @dirrmtry
- change port category from math to science.
- Completes repo copy from math/ruby-netcdf -> science/ruby-netcdf
PR: ports/165314
Submitted by: Shin-ya Murakami <murashin@gfd-dennou.org>
Carve is a C++ library designed to perform boolean operations between two
arbitrary polygonal meshes. The standard union and intersection operations
are supported, as are symmetric and asymmetric difference. It is also
possible to implement custom operations using Carve, allowing results to be
formed from any combination of inputs.
Carve supports a variety of inputs, including both closed and open surfaces,
faces with arbitrary edge counts and datasets with multiple disjoint,
embedded or touching surfaces. Carve can also interpolate arbitrary values
across faces, meaning that CSG operations need not discard colour, texture
coordinates or other data.
WWW: http://code.google.com/p/carve/
Package KFAS provides funchtions for Kalman filtering, state,
disturbance and simulation smoothing, forecasting and simulation
of state space models. All functions can use exact diffuse
initialisation when distributions of some or all elements of initial
state vector are unknown. Filtering, state smoothing and simulation
functions use sequential processing algorithm, which is faster than
standard approach, and it also allows singularity of prediction
error variance matrix. KFAS also contains function for computing
the likelihood of exponential family state space models and function
for state smoothing of exponential family state space models.
WWW: http://cran.r-project.org/web/packages/KFAS/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
The queueing toolbox provides functions for queueing networks and Markov
chains analysis. This package can be used to compute steady-state performance
measures for open, closed and mixed networks with single or multiple job
classes. Mean Valud Analysis (MVA), convolution and various bounding
techniques are implemented. Various transient and steady-state performance
measures for Markov chains can als be computed (including state occupancy
probabilities, mean time to absorption, time-averaged sojourn times), both
for continuous-time and discrete-time chains.
One of the aims of this package is to make life easier for useRs
who deal with survey data sets. It provides an infrastructure for
the management of survey data including value labels, definable
missing values, recoding of variables, production of code books,
and import of (subsets of) SPSS and Stata files. Further, it provides
functionality to produce tables and data frames of arbitrary
descriptive statistics and (almost) publication-ready tables of
regression model estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
WWW: http://www.martin-elff.net/software/memisc/
