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Jason W. Bacon 12b5c3c8f1 biology/fasttree: Update to 2.1.11
Add -trans option for amino acid alignments
Changes: https://microbesonline.org/fasttree/ChangeLog

PR:             283035
Reported by:    alster@vinterdalen.se
2024-12-03 08:55:06 -06:00
.hooks
accessibility lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
arabic editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
archivers archivers/7-zip: update to 24.09 2024-12-03 14:02:43 +03:00
astro astro/kstars: update to 3.7.3, latest upstream 2024-12-02 12:02:14 +01:00
audio audio/shairport-sync: Update to 4.3.5 2024-12-02 16:06:30 +01:00
benchmarks lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
biology biology/fasttree: Update to 2.1.11 2024-12-03 08:55:06 -06:00
cad cad/openvsp: Unbreak in 15 2024-12-02 19:39:41 +01:00
chinese devel/py-pygobject: bump consumer PORTREVISIONs after port rename 2024-11-22 17:31:54 -05:00
comms comms/gqrx: Update to 2.17.6 2024-12-03 15:43:07 +01:00
converters */*: Bump PORTREVISION on *-sbcl ports after lang/sbcl upgrade. 2024-12-03 08:21:31 +01:00
databases databases/redis-devel: Update to latest snapshot 2024-12-02 18:18:09 +09:00
deskutils deskutils/treesheets: Update to 1.0.20241202 2024-12-03 11:00:57 +00:00
devel devel/electron33: update to 33.2.1 2024-12-03 17:42:18 +09:00
dns dns/c-ares: Update to 1.34.3 2024-12-01 10:49:39 +01:00
editors editors/with-editor*: Update to 3.4.3 2024-12-02 18:16:19 +09:00
emulators emulators/qemu-devel: Update version 9.1.0.20240831=>9.1.0.20240930 2024-11-30 20:56:33 +01:00
filesystems filesystems/encfs: undeprecate and adopt 2024-12-02 15:27:29 +01:00
finance finance/py-pycoin: Update to 0.92.20241201 2024-12-02 09:48:12 +01:00
french editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
ftp lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
games games/jaggedalliance2: fix build with magic_enum v0.9.7 2024-12-02 15:27:30 +01:00
german german/dict: remove stale website 2024-11-25 17:14:37 +00:00
graphics graphics/libheif: update to 1.19.5 2024-12-03 17:43:59 +03:00
hebrew editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
hungarian editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
irc irc/weechat: Update to 4.4.4 2024-12-01 11:45:59 +01:00
japanese japanese/kasumi-unicode: dictionary management tool for anthy-unicode 2024-12-02 15:27:34 +01:00
java lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
Keywords
korean devel/py-pygobject: bump consumer PORTREVISIONs after port rename 2024-11-22 17:31:54 -05:00
lang lang/sbcl: Update to 2.4.11 2024-12-03 08:20:46 +01:00
mail mail/thunderbird: update to 128.5.1 (rc1) 2024-12-02 21:36:28 +01:00
math math/saga: Update to 9.6.2 2024-12-03 11:50:06 +01:00
misc misc/freebsd-release-manifests: Add 14.2-RELEASE MANIFEST files 2024-12-02 16:01:16 -08:00
Mk lang/rust: Update to 1.83.0 2024-12-01 10:23:26 +01:00
multimedia lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
net net/syncthing: Update to 1.28.1 2024-12-03 13:42:46 +00:00
net-im net-im/telegram-desktop: bump PORTREVISION after net-im/tg_owt update 2024-12-02 10:04:25 -05:00
net-mgmt net-mgmt/ocsinventory-ocsreports: Update to 2.12.3 2024-12-02 13:57:00 +01:00
net-p2p net-p2p/readarr: Update 0.4.3.2665 → 0.4.4.2686 2024-12-02 20:09:41 +03:00
news devel/boost: bump consu,ers after update Boost to 1.86 release 2024-11-20 13:05:25 +03:00
polish editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
ports-mgmt lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
portuguese editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
print KDE: Update KDE Plasma to 6.2.3 2024-11-29 21:54:27 +03:00
russian russian/libreoffice: fix fetch after update LibreOffice to 24.8.3 2024-11-16 20:30:35 +03:00
science science/R-cran-Epi: Update to 2.58 2024-12-01 07:49:43 +00:00
security */*: Bump PORTREVISION on *-sbcl ports after lang/sbcl upgrade. 2024-12-03 08:21:31 +01:00
shells lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
sysutils sysutils/fastfetch: update to 2.31.0 2024-12-03 15:24:13 +01:00
Templates
textproc textproc/re-flex: update to 5.1.0 2024-12-03 07:46:21 +00:00
Tools Tools/scripts: add pypi-get-latest-version.sh 2024-11-14 00:29:55 -08:00
ukrainian editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
vietnamese editors/libreoffice: update to 24.8.3 release (+) 2024-11-15 11:57:20 +03:00
www www/dooble: Update to 2024.11.23 2024-12-03 08:43:24 +01:00
x11 x11/xterm: Update to 396 2024-12-03 15:51:53 +01:00
x11-clocks x11-clocks/asclock: set PORTSCOUT 2024-11-07 05:59:51 +01:00
x11-drivers
x11-fm */*: Bump consumers of x11-toolkits/wxgtk32 2024-11-25 12:07:22 +00:00
x11-fonts x11-fonts/py-gflanguages: Update to 0.7.1 2024-11-22 14:23:06 +08:00
x11-servers x11-servers/xwayland: update 24.1.2 -> 24.1.4 to fix CVE-2024-9632 2024-11-20 20:14:36 +01:00
x11-themes x11-themes/wpgtk: update to 6.6.3 2024-12-02 15:27:29 +01:00
x11-toolkits KDE: Update KDE Plasma to 6.2.3 2024-11-29 21:54:27 +03:00
x11-wm lang/rust: Bump revisions after 1.83.0 2024-12-01 10:24:18 +01:00
.arcconfig
.gitignore
.mailmap
CHANGES
CONTRIBUTING.md CONTRIBUTING.md: Partially revert "games/xteddy: Adopt" 2024-10-30 18:04:31 +01:00
COPYRIGHT
GIDs comms/zigbee2mqtt: Add new port 2024-11-26 14:55:19 +01:00
Makefile filesystems: add new category for file systems and related utilities 2024-11-06 16:17:35 +01:00
MOVED devel/py-simple-term-menu: rename to py-simple_term_menu 2024-12-02 18:03:54 +00:00
README
UIDs comms/zigbee2mqtt: Add new port 2024-11-26 14:55:19 +01:00
UPDATING deskutils/treesheets: Update to 1.0.20241202 2024-12-03 11:00:57 +00:00

This is the FreeBSD Ports Collection.  For an easy to use
WEB-based interface to it, please see:

	https://ports.FreeBSD.org

For general information on the Ports Collection, please see the
FreeBSD Handbook ports section which is available from:

	https://docs.freebsd.org/en/books/handbook/ports/
		for the latest official version
	or:
	The ports(7) manual page (man ports).

These will explain how to use ports and packages.

If you would like to search for a port, you can do so easily by
saying (in /usr/ports):

	make search name="<name>"
	or:
	make search key="<keyword>"

which will generate a list of all ports matching <name> or <keyword>.
make search also supports wildcards, such as:

	make search name="gtk*"

For information about contributing to FreeBSD ports, please see the Porter's
Handbook, available at:

	https://docs.freebsd.org/en/books/porters-handbook/

NOTE:  This tree will GROW significantly in size during normal usage!
The distribution tar files can and do accumulate in /usr/ports/distfiles,
and the individual ports will also use up lots of space in their work
subdirectories unless you remember to "make clean" after you're done
building a given port.  /usr/ports/distfiles can also be periodically
cleaned without ill-effect.