--- conf/neo4j.conf.orig	2017-05-31 21:11:19 UTC
+++ conf/neo4j.conf
@@ -9,9 +9,9 @@
 #dbms.active_database=graph.db
 
 # Paths of directories in the installation.
-#dbms.directories.data=data
-#dbms.directories.plugins=plugins
-#dbms.directories.certificates=certificates
+dbms.directories.data=%%DBDIR%%
+dbms.directories.plugins=%%PREFIX%%/lib/neo4j/plugins
+dbms.directories.certificates=%%PREFIX%%/etc/neo4j-certificates
 #dbms.directories.logs=logs
 #dbms.directories.lib=lib
 #dbms.directories.run=run