forked from Lainports/opnsense-ports
66 lines
2.2 KiB
Text
66 lines
2.2 KiB
Text
--- Makefile.simde.orig 2024-03-12 17:20:07 UTC
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+++ Makefile.simde
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@@ -1,13 +1,26 @@
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-CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra
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-CPPFLAGS= -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
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-INCLUDES= -Ilib/simde
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-OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o lchain.o align.o hit.o map.o format.o pe.o seed.o esterr.o splitidx.o \
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- ksw2_extz2_simde.o ksw2_extd2_simde.o ksw2_exts2_simde.o ksw2_ll_simde.o
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+
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+# Makefile patches rejected by upstream
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+
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+CFLAGS?= -g -Wall -O2
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+CFLAGS+= -Wc++-compat -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -D__SSE2__
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+CPPFLAGS?= -DHAVE_KALLOC
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+OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o \
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+ index.o lchain.o align.o hit.o map.o format.o pe.o seed.o \
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+ esterr.o splitidx.o ksw2_extz2_simde.o ksw2_extd2_simde.o \
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+ ksw2_exts2_simde.o ksw2_ll_simde.o
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PROG= minimap2
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PROG_EXTRA= sdust minimap2-lite
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LIBS= -lm -lz -lpthread
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+PREFIX?= /usr/local
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+MAN1DIR?= ${PREFIX}/share/man/man1
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+DATADIR?= ${PREFIX}/share/minimap2
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+MKDIR?= mkdir
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+CP?= cp
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+INSTALL?= install
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+STRIP?= strip
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+
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ifneq ($(arm_neon),) # if arm_neon is defined
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ifeq ($(aarch64),) #if aarch64 is not defined
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CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
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@@ -26,7 +39,7 @@ endif
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LIBS+=-fsanitize=thread
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endif
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-.PHONY:all extra clean depend
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+.PHONY:all extra install install-strip clean depend
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.SUFFIXES:.c .o
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.c.o:
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@@ -61,6 +74,22 @@ ksw2_exts2_simde.o:ksw2_exts2_sse.c ksw2.h kalloc.h
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$(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@
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# other non-file targets
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+
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+
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+install: all
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+ ${MKDIR} -p ${DESTDIR}${PREFIX}/bin
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+ ${MKDIR} -p ${DESTDIR}${MAN1DIR}
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+ ${MKDIR} -p ${DESTDIR}${DATADIR}
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+ ${INSTALL} -c minimap2 ${DESTDIR}${PREFIX}/bin
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+ ${INSTALL} -c minimap2-lite ${DESTDIR}${PREFIX}/bin
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+ ${INSTALL} -c sdust ${DESTDIR}${PREFIX}/bin
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+ ${INSTALL} -c minimap2.1 ${DESTDIR}${MAN1DIR}
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+ ${CP} -R test ${DESTDIR}${DATADIR}
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+
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+install-strip: install
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+ ${STRIP} ${DESTDIR}${PREFIX}/bin/minimap2
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+ ${STRIP} ${DESTDIR}${PREFIX}/bin/minimap2-lite
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+ ${STRIP} ${DESTDIR}${PREFIX}/bin/sdust
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clean:
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rm -fr gmon.out *.o a.out $(PROG) $(PROG_EXTRA) *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg*
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